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Rob Patro
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Accounting for fragments of unexpected origin improves transcript quantification in RNA-seq simulations focused on increased realism
Alignment and mapping methodology influence transcript abundance estimation
Sketching and Sublinear Data Structures in Genomics
Salmon provides fast and bias-aware quantification of transcript expression
A computational method for designing diverse linear epitopes including citrullinated peptides with desired binding affinities to intravenous immunoglobulin
Efficient index maintenance under dynamic genome modification
Data-dependent bucketing improves reference-free compression of sequencing reads
Reference-based compression of short-read sequences using path encoding
Identification of alternative topological domains in chromatin
Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms
Multiscale identification of topological domains in chromatin
Predicting protein interactions via parsimonious network history inference
Resolving spatial inconsistencies in chromosome conformation measurements
Topological properties of chromosome conformation graphs reflect spatial proximities within chromatin
Global network alignment using multiscale spectral signatures
Parsimonious reconstruction of network evolution
Resolving spatial inconsistencies in chromosome conformation data
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