Geet Duggal

Latest

• Salmon provides fast and bias-aware quantification of transcript expression
• Deconvolution of ensemble chromatin interaction data reveals the latent mixing structures in cell subpopulations
• Identification of alternative topological domains in chromatin
• Higher-order chromatin domains link eQTLs with the expression of far-away genes
• Multiscale identification of topological domains in chromatin
• Resolving spatial inconsistencies in chromosome conformation measurements
• Topological properties of chromosome conformation graphs reflect spatial proximities within chromatin
• Graph rigidity reveals well-constrained regions of chromosome conformation embeddings
• Resolving spatial inconsistencies in chromosome conformation data
• The missing models: A data-driven approach for learning how networks grow
• Uncovering many views of biological networks using ensembles of near-optimal partitions