Improved analysis methods for RNA-seq

Carl Kingsford
Herbert A. Simon Professor of Computer Science


(2020). Exact Transcript Quantification Over Splice Graphs. In Proceedings of WABI 2020; journal version in Alg. Mol. Bio. 2021.

PDF Project DOI Journal Version

(2019). Detecting Transcriptomic Structural Variants in Heterogeneous Contexts via the Multiple Compatible Arrangements Problem. 19th International Workshop on Algorithms in Bioinformatics (WABI 2019) 18:1–18:19 (2019); journal version in Alg Mol Bio (2020).

Preprint PDF Project Project DOI Journal Version

(2019). More accurate transcript assembly via parameter advising. The 2019 ICML Workshop on Computational Biology; journal version in Journal of Computational Biology.

Preprint PDF Code Project Project