Current Group Members
- Dr. Guillaume Marçais, Senior Systems Scientist
- Mohsen Ferdosi, CPCB Ph.D. student
- Shane Elder, CPCB Ph.D student
- Shiyi (Zoe) Du, CPCB Ph.D. student
- Jiayi Li, CPCB Ph.D. student
Former Ph.D. Students
- Dr. Haotian Teng, CPCB Ph.D. in Computational Biology (2024); co-advised with Ziv Bar-Joseph
- Dr. Yihang Shen, Ph.D. in Computational Biology (2024), Postdoc Princeton University
- Dr. Minh Hoang, Ph.D. in Computer Science (2023), Postdoc Princeton University
- Dr. Yutong Qiu, Ph.D. in Computational Biology (2023), Illumina
- Dr. Laura Tung, Ph.D. in Computational Biology (2022), Guardant Health
- Dr. Hongyu Zheng, Ph.D. in Computational Biology (2022), Postdoc at Princeton
- Dr. Cong Ma, Ph.D. in Computational Biology (2020). Assistant Professor, University of Michigan
- Dr. Natalie Sauerwald, Ph.D. in Computational Biology (2020). Associate Research Scientist, Flatiron Institute
- Dr. Brad Solomon, Ph.D. in Computational Biology. Teaching Assistant Professor at UIUC.
- Dr. Hongyi Xin, Ph.D. in Computer Science from CMU. Associate Professor at SJTU
- Dr. Emre Sefer, Ph.D. in Computational Biology from CMU, Associate Professor at Ozyegin University, Istanbul Turkey.
- Dr. Hao Wang, CPCB Ph.D. student. Guardant Health.
- Dr. Geet Duggal, Ph.D. in Computational Biology from CMU. Director of Engineering at DNAnexus.
- Dr. Darya Filippova, Ph.D. in Computational Biology from CMU, at BetterOmics.
- Dr. Rob Patro, Ph.D. in C.S. from University of Maryland; Associate Professor at University of Maryland, College Park
- Dr. Guillaume Marçais, Ph.D. in Applied Math from Univ. of Maryland (co-advised with Jim Yorke), Senior System Scientist at CMU
- Dr. Grecia Lapizco-Encinas, Ph.D. in C.S. from Univ. of Maryland (co-advised with Jim Reggia)
- Dr. Saket Navlakha, Ph.D. in C.S. from Univ. of Maryland; Associate Professor at CSHL
Former Postdocs
- Dr. Prashant Pandey, Postdoc. now Assistant Professor at Northeastern CS
- Dr. Dan DeBlasio, Lane Fellow. Assistant Teaching Professor, CMU
- Dr. Heewook Lee, Lane Fellow. Assistant Professor at ASU (2019)
- Dr. Mingfu Shao, Lane Fellow (2018). Associate Professor at Penn State
- Dr. Jeremy Bellay, Ph.D. (postdoc)
Undergraduate, MS, and Other Group Members
This is an incomplete list, unfortunately. (If you think you should be added let me know!)
- Zhiwen Yan, MSCB student, research assistant at Arc Institute (2024)
- Yuqi Huang, MSCB student, Fred Hutch Cancer Center (2024)
- Nox Yu, MSCB student, research associate at Boston University
- Gwen Ge, MSAS student, now at Bluesphere Bio.
- Shawn Baker, Senior Programmer, now at Ocean Genomics, Inc.
- Yinjie Gao, MS student (2019), now at Tempus
- Raymond Song, MS student (2019), now Ph.D. student at Purdue
- Han Xie, Research Assistant, now a Ph.D. student at Emory (2019)
- Kwanho Kim, MS student, now at the Broad (2019)
- Daniel Bork, MS student (2020)
- Qian Wan, MS student (2015), now at Facebook
- Tim Wall, MS student, Senior Data Scientists at Caterpillar